crabron.github.io

articles and manuals

Supplement`s compiled Rmds files from published articles and manuals for colleagues.

Files with code of processing data, analysis and plot generation. It can also be found in the article’s supplements files.

crimea

Kimeklis AK, Gladkov GV, Zverev AO, Kichko AA, Andronov EE, Ergina EI, Kostenko IV, Abakumov EV. 2021. Microbiomes of different ages in Rendzic Leptosols in the Crimean Peninsula. PeerJ 9:e10871 https://doi.org/10.7717/peerj.10871

nalchik

Kimeklis AK, Gladkov GV, Tembotov RH, Kichko AA, Pinaev AG, Hosid SL, Andronov EE, Abakumov EV (2022) Microbiome composition of disturbed soils from sandy-gravel mining complexes with different reclamation approaches. One Ecosystem 7: e83756. https://doi.org/10.3897/oneeco.7.e83756

Some code/manuals for colleagues.

ANCOM-BC demonstration on the straw degradation chronoseries

Russian. Demonstration of the AncomBC package.

Jupyter notebook with 16S alignment example

Russian. Some multiple alignment tricks for the 16S dataset.

WGCNA - straw

Using WGCNA to isolate dynamic groups in straw decomposition chronoseries.

Kimeklis AK, Gladkov GV, Orlova OV, Afonin AM, Gribchenko ES, Aksenova TS, Kichko AA, Pinaev AG, Andronov EE. The Succession of the Cellulolytic Microbial Community from the Soil during Oat Straw Decomposition. International Journal of Molecular Sciences. 2023; 24(7):6342. https://doi.org/10.3390/ijms24076342

pulkovo

Russian. Salinity stress - change beetween rare and abundant component of soil microbiome. Interrupted.